## Reference name: NC_016845.1 Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome, complete genome
## Reference length (bp): 5333942

First, an overview of all the samples analysed:

name raw total sequences filtered total sequences mapped reads (n) mapped reads (%) unmapped reads (n) unmapped reads (%) error rate
022 6463132 0 6463132 5535366 85.65 927766 14.35 0.0048
075 3459020 0 3459020 3326551 96.17 132469 3.83 0.0072
078 2782887 0 2782887 2255459 81.05 527428 18.95 0.0135
095 3026972 0 3026972 2269367 74.97 757605 25.03 0.0205
101 1408922 0 1408922 1273778 90.41 135144 9.59 0.0144
name mean depth standard deviation depth median depth minimum depth maximum depth coverage depth 0 (%) coverage defined by the user: depth 0 to 5 (%) positions with depth = 0 distributed in these regions regions with size = 1 maximum region size regions with size 500 or more
022 145.93 61.49 141 0 4884 97.73 97.69 121312 74 10 22297 25
075 91.17 27.97 91 0 477 98.21 98.16 95427 84 7 22548 25
078 61.75 23.64 65 0 451 92.64 92.49 392842 240 40 30604 57
095 61.62 27.22 64 0 953 92.99 92.56 373911 354 47 35374 76
101 34.84 14.09 36 0 230 92.60 92.34 394941 284 70 41984 54
name MAPping quality 95% reads % reads MAPping quality >= 30 reads with 0 mismatches (n) reads with 0 mismatches (%) highest number of mismatches in a read number of those reads % of those reads 95% of reads have this or less number of mismatches
022 60 98.13 4227478 76.37215 61 1 0.000018 4
075 60 98.50 2238452 67.29048 68 1 0.000030 6
078 60 98.01 818173 36.27523 53 1 0.000044 8
095 60 98.15 704805 31.05734 66 7 0.000308 12
101 60 98.43 440443 34.57769 52 2 0.000157 8
name number of variants transitions (n) transitions (%) transversions (n) transversions (%) ti/tv indels (n) indels (%)
022 5144 3375 65.61 1529 29.73 2.21 240 4.67
075 6351 4132 65.05 1960 30.86 2.11 259 4.08
078 30933 21751 70.31 8733 28.23 2.49 449 1.45
095 33614 23371 69.53 9897 29.43 2.36 346 1.03
101 30753 21657 70.43 8672 28.20 2.50 424 1.38

And second, some interactive graphs representing important mapping parameters:

## Use the options "Show closest data on hover" or "Compare data on hover" on the graphs to see the values